{ "SchemaVersion": "1", "Kind": "DirectoryEntry", "SubjectType": "mcp-server", "Slug": "galaxy-mcp", "Name": "galaxy-mcp", "Title": "galaxy-mcp MCP Server | Pod", "Description": "MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows", "CanonicalUrl": "https://askpod.ai/mcp/galaxy-mcp", "MarkdownUrl": "https://askpod.ai/mcp/galaxy-mcp.md", "JsonUrl": "https://askpod.ai/mcp/galaxy-mcp.json", "DatePublished": "2026-08-31T23:50:54.202Z", "DateModified": "2026-08-31T23:50:54.202Z", "RegistryName": "io.github.galaxyproject/galaxy-mcp", "RepositoryUrl": "https://github.com/galaxyproject/galaxy-mcp", "VerificationStatus": "unverified", "Identities": [], "Sources": [ { "Source": "github_issues", "LastSeenAt": "2026-08-31T23:50:54.202Z" }, { "Source": "official_mcp_registry", "ExternalId": "io.github.galaxyproject/galaxy-mcp", "LastSeenAt": "2026-08-31T23:50:54.202Z" } ], "Categories": [], "FirstParty": false, "Deployments": [ { "Kind": "package", "PackageRegistry": "pypi", "PackageIdentifier": "galaxy-mcp", "ConfigSnippet": "{\n \"mcpServers\": {\n \"galaxy-mcp\": {\n \"command\": \"npx\",\n \"args\": [\n \"-y\",\n \"galaxy-mcp\"\n ]\n }\n }\n}" } ], "Tools": { "Claimed": [], "ClaimedCount": 0, "Observed": null, "ObservedCount": null, "Verified": false, "Mismatch": null }, "Measured": null, "Usage": null, "Issues": [ { "Title": "run_tool returns raw Galaxy HTML error pages on 4xx, which LLM clients cannot parse", "Excerpt": "When `run_tool` gets a 4xx from Galaxy, it returns the raw HTML error page. The actual message sits inside a `

` under ~400 characters of doctype/stylesheet boilerplate.\n\nObserved while driving Loom with a local open-weight model against usegalaxy.org:\n\n```\nError: Error calling tool 'run_tool': Run tool failed: Unexpected HTTP status code: 400:\n\n\n\n \n ` under ~400 characters of doctype/stylesheet boilerplate.\n\nObserved while driving Loom with a local open-weight model against usegalaxy.org:\n\n```\nError: Error calling tool 'run_tool': Run tool failed: Unexpected HTTP status code: 400:\n\n\n\n \n