Reported issues for CLIO Node Hardware

Pod holds 9 of 9 problems reported by people outside the maintainer team. Issues filed by the project's own owners, members and collaborators are excluded entirely — a maintainer's release checklist is not a warning to a prospective user.

Back to CLIO Node Hardware.

Most discussed

Parquet MCP - Fix

Next aspects to be reviewed:

Reading raw data from the file
Apache Arrow library exploration. Optimization the loading of parquet files in memory and their usage in memory.

Read the thread · 2025-08-04 · open · outside contributor · 0 comments

HTML PAGE FOR THE MCPS

Filling out the available actions for the each MCP according to their capabilities

Read the thread · 2025-07-23 · closed · outside contributor · 0 comments

Darshan MCP Test Failures - asyncio not found and inaccurate sequential access count

The root cause of the asyncio problem seems to be inconsistent importing/installation of asyncio, and the latter appears to be because the Darshan MCP considers "sequential access" to be strictly above an 80% threshold, while two of the test files are at exactly 80% and 75%.

Full output from running pytest in the Darshan/tests directory:

test_darshan_parser.py ...F.....F                                                                                                                         

[Read the thread](https://github.com/iowarp/clio-kit/issues/172) · 2025-07-23 · closed · outside contributor · 1 comment

### Claude processing fails when called with no tools

Issue observed when using the Arxiv MCP with Claude 3.5 Sonnet:

Query: Use the search arvix tool to find a paper on mathematics 2025-07-22 11:09:51,096 - INFO - Processing request of type CallToolRequest 2025-07-22 11:09:51,097 - INFO - Searching ArXiv for query: mathematics 2025-07-22 11:09:51,116 - INFO - Executing ArXiv query with params: {'search_query': 'cat:mathematics', 'start': 0, 'max_results': 5, 'sortBy': 'submittedDate', 'sortOrder': 'descending'} 2025-07-22 11:09:51,425 - INFO -

Read the thread · 2025-07-22 · closed · outside contributor · 1 comment

Review ENTIRE MCP for Automatic Script

Plan to go over each MCP tools/actions and fix Args, Return and Desctiption sections for the script to correctly and nicely pick up. After that it will ensure that the README will have correct information about each tool of the each MCP

Read the thread · 2025-07-22 · closed · outside contributor · 0 comments

Automated Script to update the README of MCPs upon merge.

Script will run in each merge to /dev and /main to check for the modification/deletion or creation of the new tools of any MCPs. It will populate the README of that MCPs and pick up the Args, Return and Description from the codebase.

Read the thread · 2025-07-22 · closed · outside contributor · 0 comments

Security Notice: Potential API Key Exposure

Hi,

I am an automated tool that scans for exposed API keys. I found what appears to be an API key in your repository.

API Key Type: GoogleGemini Redacted Key: AI***********************************_8 File: bin/confs/Gemini.yaml URL: https://github.com/iowarp/scientific-mcps/blob/f3638b78cf9b9ac88627ad33397f002313b8285c/bin/confs/Gemini.yaml

For your security, please review and rotate this key if necessary. Do not share sensitive keys in public repositories.

If you have que

Read the thread · 2025-06-24 · closed · external user · 1 comment

Jarvis MCP: Pipeline indexes

Jarvis packages are now expected to come with pipeline indexes, which store example configurations of packages. Iowarp, for example, has unit tests and stuff defined as pipeline indexes.

We should be able to have something like the following query

Create an iowarp pipeline. Configure to use x threads in the chimaera_runtime.

For the context, use:

jarvis ppl index show --filter=iowarp

We then select the first index matching the option and run:

jarvis ppl index load [pipeli

[Read the thread](https://github.com/iowarp/clio-kit/issues/27) · 2025-05-27 · open · outside contributor · 0 comments

## Most recent

### Data Fusion MCP

Researcb following topics
[Apache Arrow](https://context7.com/apache/arrow)
[Apache DataFusion](https://context7.com/apache/datafusion)
[Apache Parquet](https://context7.com/apache/parquet-site)

Next steps in to integrate it with the Parquet MCP

[Read the thread](https://github.com/iowarp/clio-kit/issues/263) · 2025-08-04 · open · outside contributor · 0 comments

The remaining reports are on [the project's issue tracker](https://github.com/iowarp/clio-kit/issues).